Selected peer-reviewed articles:

2021:

1. Mapping subnational HIV mortality in six Latin American countries with incomplete vital registration systems publication BMC Medicine publication date January 8, 2021
2. Hemoglobin induces early and robust biofilm development in Streptococcus pneumoniae by a pathway that involves comC but not the cognate comDE two-component system publication ASM Infection and Immunity publication date January 1, 2021

2020:

1. Comparison of transcriptomes from two chemosensory organs in four decapod crustaceans reveals hundreds of candidate chemoreceptor proteins publication Plos One publication date March 12, 2020
2. Causes of blindness and vision impairment in 2020 and trends over 30 years, and prevalence of avoidable blindness in relation to VISION 2020: the Right to Sight: an analysis for the Global Burden of Disease Study, publication The Lancet Global Health publication date 2020, ISSN 2214-109X, https://doi.org/10.1016/S2214-109X(20)30489-7
3. Effects of temperature on COVID-19 transmission publication medRxiv publication date March 29, 2020
4. DNA Encoded Glycan Libraries as a next-generation tool for the study of glycan-protein interactions publication bioRxiv publication date March 31, 2020
5. Clustering Reveals Common Check-Point and Growth Factor Receptor Genes Expressed in Six Different Cancer Types publication Springer: Lecture Notes in Computer Science publication date April 30, 2020
6. PLK4 is a HIF-1α target gene: A novel mechanism inducing centrosome amplification in tumor cell publication AACR; Cancer Res 2020;80(16 Suppl) publication date August 2020
7. Common cancer biomarkers of breast and ovarian types identified through artificial intelligence publication Wileys: Chemical Biology and Drug Design publication date May 15, 2020
8. Hemoglobin stimulates vigorous growth of Streptococcus pneumoniae and shapes the pathogen’s global transcriptome publication NPG: Scientific Reports publication date Sep 15, 2020
9. Scalable, Reliable and Robust Data Mining Infrastructures publication IEEE Fourth World Conference on Smart Trends in Systems, Security and Sustainability, London publication date Oct 06, 2020

2019:

1. Delineating the plausible molecular vaccine candidates and drug targets of multidrug resistant Acinetobacter baumannii publication Frontiers in Cellular and Infection Microbiology publication date May 23, 2019
2. Developing a DEVS-JAVA Model to Simulate and Pre-test Changes to Emergency Care Delivery in a Safe and Efficient Manner publication Springer: Lecture Notes in Computer Science publication date April 30, 2019
3. Structural studies of antiviral inhibitor with HIV-1 protease bearing drug resistant substitutions of V32I, I47V and V82I publication date May 12, 2019 publication Elsevier: Biochemical and Biophysical Research Communications
4. RodentSQL https://www.biomedicine.video/methods-technologies/rodentsql-software-suite-animal-protocols publication date Oct, 2019 Video Journal of Biomedicine: DOI 10.2217/vjbm-2019-0002 
5. HIV-1 protease triple mutants V32I, I47V, V82I with GRL-011-11A (a methylamine bis-Tetrahydrofuran P2-Ligand, sulfonamide isostere derivate) publication date May 29, 2019 publication RCSB PDB DOI: 10.2210/pdb6OTG/pdb
6. Web-Based Application for Accurately Classifying Cancer Type from Microarray Gene Expression Data Using a Support Vector Machine (SVM) Learning Algorithm publication Springer: Lecture Notes in Computer Science publication date April 15, 2019
7. A Six-Gene-Based Prognostic Model Predicts Survival in Head and Neck Squamous Cell Carcinoma Patients publication date Jan 2019 publication Springer: Journal of Maxillofacial and Oral Surgery
8. Curcumin in combination with anti-cancer drugs: A nanomedicine review publication date Jan 2019 publication Elsevier: Pharmacological Research
9. Current clinical trials update on HIV/AIDS: a systematic review publication date Feb 2019 publication International Journal of HIV-Related Problems: HIV & AIDS Review
10. Predicting the prognosis for cancer patients with interleukins gene expression level publication date Apr 2019 publication AACR; Cancer Res 2019;79(13 Suppl)
11. Precision medicine and future of cancer treatment publication date Jan 2019 publication Precision Cancer Medicine
12. Spermine and oxacillin stress response on the cell wall synthesis and the global gene expression analysis in Methicillin-resistance Staphylococcus aureus publication date Jan 2019 publication Springer: Genes and Genomics
13. In Silico Approaches for Unearthing Bacterial Quorum-Sensing Inhibitors Against Pathogenic Bacteria publication date Nov 2019 publication Springer: Implication of Quorum Sensing and Biofilm Formation in Medicine, Agriculture and Food Industry

2018:

1. Analysis of drug resistance in HIV protease publication date Oct 2018 publication BMC: Bioinformatics
2. RodentSQL: a software suite for colony management of animal protocols publication date Sep 2018 publication Future Science OA
3. Software effort prediction with algorithm based frameworks publication date Sep 2018 publication International Journal of Engineering and Computer Science
4. In silico Identification of the Indispensable Quorum Sensing Proteins of Multidrug Resistant Proteus mirabilis publication date Aug 2018 publication Frontiers and Cellular and Infection Microbiology
5. A side-effect free method for identifying cancer drug targets publication date Apr 2018 publication Nature: Scientific Reports
6. Evaluating the computing efficiencies (specificity and sensitivity) of graphics processing unit (GPU)-accelerated DNA sequence alignment tools against central processing unit (CPU) alignment tool publication date Mar 2018 publication Journal of Bioinformatics and Sequence Analysis
7. Online electronic laboratory notebook: A secured cloud storage system scripted in Hypertext Pre-processor (PHP) programming language publication date Feb 2018 publication Journal of Engineering and Technology Research
8. Quorum sensing: An imperative longevity weapon in bacteria publication date Jan 2018 publication African Journal of Microbiology Research
9. Transcriptomic data for analyzing global gene expression patterns in Methicillin-resistance Staphylococcus aureus in response to spermine and oxacillin stress publication date Dec 2018 publication Elsevier: Data in Brief

2017:

1. Evaluation of centrosome clustering protein KIFC1 as a potential prognostic biomarker in serous ovarian adenocarcinomas
   publication date May 2017 publication ACS: Journal of Clinical Oncology
2. Computational Identification of Indispensable Virulence Proteins of Salmonella Typhi CT18 publication date Apr 2017 publication Current Topics in Salmonella and Salmonellosis

2016:

1. A centrosome clustering protein, KIFC1, predicts aggressive disease course in serous ovarian adenocarcinomas publication date Jan 2016 publication BMC: Journal of Ovarian Research

2014:

1. Interactome analyses of Salmonella pathogenicity islands reveal SicA indispensable for virulence publication date Jul 2014 publication Elsevier: Journal of Theoretical Biology
2. A centrosome clustering suspect, HSET, is a potential biomarker for breast cancer aggressiveness in triple-negative breast cancer (TNBC) patients, Elsevier: Gynecologic Oncology
3. KIFCI, a novel putative prognostic biomarker for ovarian adenocarcinomas: delineating protein interaction networks and signaling circuitries publication date Jul 2014 publication BMC: Journal of Ovarian Research

2013-2011

1. Determining the impact of Vitamin E & Selenium supplementation on gene expression in the brains of mice infected with T. gondii
   publication date Mar 2013 publication Proceedings of International Work-Conference on Bioinformatics and Biomedical Engineering
2. Investigating Emerging Trends of Intraocular Lens (IOL’s) Implantation in Rural India for Cataract publication date 2013 publication Opthalmology
3. Identifying indispensable proteins of the type III secretion systems of Salmonella enterica serovar Typhimurium strain LT2 publication date Jul 2012 publication BMC: Bioinformatics
4. Statistical analysis of microarray gene expression data from a mouse model of toxoplasmosis publication date Aug 2011 publication BMC: Bioinformatics
5. Determining impact of antioxidant supplementation on gene expression in the brains of mice infected with T.gondii J. of the Kentucky Academy of Science, 72(2):115-127 (2011). https://doi.org/10.3101/1098-7096-72.2.115

Selected conference proceedings:

1. 4th International Conference on Applied Mathematics and Simulation 2021. Machine learning application in genomics, by Shrikant Pawar, Keynote speaker and general chair, http://www.4th-amms.org/com.html
2. 4th International Cells in Experimental Life Science Workshop, CELLS 2020. Depositing single cell sequencing data to shared data portals, by Shrikant Pawar, Anthony Melillo, Hailong Meng, Darwin D’Souza, Bjoern Peters, Randi Vita, Steven H. Kleinstein, Kei-Hoi Cheung.
3. 8th International Work-Conference on Bioinformatics and Biomedical Engineering, Granada, Spain, 2020. Clustering reveals common check-point and growth factor receptor genes expressed in six different cancer types, by Pawar SD, Stanam A and Lahiri C.
4. 4th Smart Trends in Systems, Security and Sustainability Conference, London, UK, 2020. Scalable, reliable and robust data mining infrastructures, by Pawar SD, Stanam A.
5. American Association for Cancer Research, Atlanta, GA, March 2019. Predicting the prognosis for cancer patients with interleukins gene expression level, by Pawar SD, Stanam A.
6. Scientific Computing Conference, Atlanta, GA, October 2018. Studies of four investigational protease inhibitors with HIV-1 protease bearing drug resistant substitutions of V32I, I47V and V82I, by Pawar SD, Irene Weber, and Robert Harrison. 
7. Scientific Computing Conference, Atlanta, GA, October 2017. Analysis of Drug Resistance in HIV PR, by Pawar SD, Irene Weber, Christopher F, and Robert Harrison. 
8. Computer Science Poster & Demo Day, Atlanta, GA, October 2018. Studies of four investigational HIV-1 protease inhibitors, by Pawar SD, Irene Weber, and Robert Harrison. https://grid.cs.gsu.edu/xhu/CSPoster&DemoDay/PastProgram_2018Fall.pdf 
9. 2nd International Conference on Genomics (ICG), Sacremento, California, USA, September 2013. Topic: ‘Analyzing Expression Pattern’s and Correlation’s for HSET, Survivin & Ki67 genes in ER, PR & HER2 Negative Breast Cancer Patient’s’, by Pawar S.D, Vaishali Phannu, and Ritu Aneja.
10.  244th American Chemical Society (ACS) Conference, Sandi ego Convention Center, California, USA, March 2012. Topic: ‘Statistical Analysis of Microarray Gene Expression Data from a Mouse Model of Toxoplasmosis’, by Pawar S.D, D. Cheryl and R. Claire.
11. 11th International Conference, Functional Foods and Chronic Inflammation: Science and Practical Application, Sandi ego, California, USA, August 2012. Topic: ‘Determining the impact of vitamin E and selenium supplementation on gene expression in the brains of mice infected with T. gondii’, by Pawar S.D, D. Cheryl and R. Claire.
12. 11th Annual Kentucky Bio Medical Research Infrastructure (KBRIN) Conference, Seelbach Hilton, Kentucky, USA, March 2012. Topic: ‘Identifying Indispensable Proteins of the Type III Secretion Systems of Salmonella enterica serovar Typhimurium strain LT2’, by Pawar S.D, Luo Q, Sabarinathan R, Ashraf M, and Lahiri C.
13. 112th Sigma Xi Annual Meeting & International Research Conference, Raleigh, North Carolina, USA, Nov 2011. Topic: ‘Statistical Analysis of Microarray Gene Expression Data from a Mouse Model of Toxoplasmosis’, by Pawar S.D, D. Cheryl and R. Claire.
14. WKU Bio informatics and Information Science Center (WKU-BISC) Research Symposium, Western Kentucky University, Bowling Green, Kentucky, USA, Nov 2011. Topic: ‘Statistical Analysis of Microarray Gene Expression Data from a Mouse Model of Toxoplasmosis’, by Pawar S.D, D. Cheryl and R. Claire.
15. 97th Annual Kentucky Academy of Science (KAS) Conference, Murray State University, Murray, Kentucky, USA, Nov 2011. Topic: ‘Statistical Analysis of Microarray Gene Expression Data from a Mouse Model of Toxoplasmosis’, by Pawar S.D, D. Cheryl and R. Claire.
16. 97th Annual Kentucky Academy of Science (KAS) Conference, Murray State University, Murray, Kentucky, USA, Nov 2011. Topic: ‘Elucidation of mechanism of anti H. pylori activity of Hesperidin by determination of modulated expression endogenous biomarkers in laboratory rats’, by Pawar S.D, P. Ghosh, A.D. Kandhare, T.P. Gosavi, and S. L. Bodhankar.
17. 41st Annual Student Research Conference (WKU ASRC), Western Kentucky University, Bowling Green, Kentucky, USA, March 2011. Topic: ‘Statistical Analysis of Microarray Gene Expression Data from a Mouse Model of Toxoplasmosis’, by Pawar S.D, D. Cheryl and R. Claire.
18. 10th Annual Kentucky Bio Medical Research Infrastructure (KBRIN) Conference, University of Memphis, Tennessee, USA, Jan 2011. Topic: ‘Comparing Vitamin E and Selenium diet effects on Brain of a Normal and Toxoplasma infected mice’, by Pawar S.D, D. Cheryl and R. Claire.
19. 96th Annual Kentucky Academy of Science (KAS) Conference, Western Kentucky University, Bowling Green, Kentucky, USA, Nov 2010. Topic: ‘Identification of differentially expressed genes in mice brain with Agilent Microarray amongst normal mice on diet without Vitamin E and Selenium, normal mice on diet with Vitamin E and Selenium, Mice infected with Toxoplasma Gondi but diet without Vitamin E and Selenium and Mice infected with Toxoplasma Gondi and diet containing Vitamin E and Selenium’, by Pawar S.D, D. Cheryl and R. Claire.

 Interesting Seminars Attended: